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Often an OS will respond differently to the second transmission of a probe than to the first. For example, sometimes after it sends a SYN/ACK it loses patience and sends a RST. The different second probe often has different flags and options. In OS integration, I normally want to compare with the first set of responses whenever they differ, so keep them in the first position when sorting.
Here is some documentation for Nmap, but these files are much less comprehensive than what you'll find at the actual Nmap documentation site ( http://nmap.org ).
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